%0 Journal Article %T Whole-Genome Sequencing Analysis from the Chikungunya Virus Caribbean Outbreak Reveals Novel Evolutionary Genomic Elements %+ Populations virales et Pathogenèse - Viral Populations and Pathogenesis %+ International Group for Data Analysis (IGDA) %+ The University of Texas Medical Branch (UTMB) %+ Institut Pasteur de la Guyane %+ Sackler Faculty of Medicine %+ Institut Pasteur de Nouvelle-Calédonie %A Stapleford, Kenneth, A %A Moratorio, Gonzalo %A Henningsson, Rasmus %A Chen, Rubing %A Matheus, Severine %A Enfissi, Antoine %A Weissglas-Volkov, Daphna %A Isakov, Ofer %A Blanc, Hervé %A Mounce, Bryan C. %A Dupont-Rouzeyrol, Myrielle %A Shomron, Noam %A Weaver, Scott %A Fontes, Magnus %A Rousset, Dominique %A Vignuzzi, Marco %Z This work was supported by a Institut Pasteur Programme Transversal de Recherche PTR 489 grant, the French Government ’s Investissementd’Avenir program, Laboratoire d ’Excellence“ Integrative Biology of Emerging Infectious Diseases ” grant ANR-10-LABX-62-IBEID) and a “ Equipe FRM DEQ20150331759 ” grant from the French Fondation pour la Recherche Médicale (KAS, MV). RC and SCW were supported by National institutes of Health Contract HHSN272201000040I/HHSN27200004/D04, and by the Institute for Human Infections and Immunity at the University of Texas Medical Branch. DWV was supported by the Edmond J. Safra Center for Bioinformatics and the Center for Nanoscience and nanotechnology at Tel-Aviv University. %< avec comité de lecture %@ 1935-2727 %J PLoS Neglected Tropical Diseases %I Public Library of Science %V 10 %N 1 %P e0004402 %8 2016-01-25 %D 2016 %R 10.1371/journal.pntd.0004402 %M 26807575 %Z Life Sciences [q-bio] %Z Life Sciences [q-bio]/Microbiology and Parasitology %Z Life Sciences [q-bio]/Microbiology and Parasitology/VirologyJournal articles %X Chikungunya virus (CHIKV), an alphavirus and member of the Togaviridae family, is capable of causing severe febrile disease in humans. In December of 2013 the Asian Lineage of CHIKV spread from the Old World to the Americas, spreading rapidly throughout the New World. Given this new emergence in naïve populations we studied the viral genetic diversity present in infected individuals to understand how CHIKV may have evolved during this continuing outbreak. %G English %2 https://riip.hal.science/pasteur-01634324/document %2 https://riip.hal.science/pasteur-01634324/file/journal.pntd.0004402.pdf %L pasteur-01634324 %U https://riip.hal.science/pasteur-01634324 %~ INSERM %~ PASTEUR %~ RIIP %~ CNRS %~ RIIP_GUYANE %~ RIIP_NOUVELLECALEDONIE %~ ANR %~ FRM %~ PASTEUR_UMR3569 %~ VIR-POP-PATH